Haplous

Haplotype extraction and comparison method.

Haplous is a software that identifies haplotypes from genotype data and then compares them within and between sample groups. It produces a ranked list of regions fulfilling the predefined criteria and different parameters can be flexibly adjusted by the user to suit each study individually.
Haplous is implemented in Java and in Anduril components. These can be downloaded from this page.

User's guide

Component documentation

Haplous components - Example pipeline

Haplous.jar - Java API